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Deep Genomics

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Deep Genomics

deepgenomics.com

Company research

Public company, workplace, funding, and market signals

Updated Jul 29, 2026

Overview

Deep Genomics Inc. is a private Toronto-founded AI-first TechBio/biotechnology company developing genetic medicines. It combines computational biology, machine learning, RNA biology, automation, and experimental data to discover and develop therapeutics for genetically defined diseases. The company has been transitioning from a platform company toward a forward-integrated biopharmaceutical company.

Primary product

The Biological Foundation Model (BioFM) Platform, including BigRNA and related models such as REPRESS, evolved from the AI Workbench. It combines AI model development, fit-for-purpose biological datasets, lab-in-the-loop workflows, screening technologies, and software systems to decode RNA biology, identify therapeutic targets, and design RNA/oligonucleotide medicines.

Founded

2014

Headquarters

480 University Avenue, Suite 1300, Toronto, Ontario M5G 1V2, Canada

Team size

80–90 (LinkedIn-derived estimate; another database reports 101–250)

Work style

Hybrid

Industry

Biotechnology Research

Sub-industry

AI-enabled drug discovery, RNA therapeutics, computational biology, genetic medicines

Offices

480 University Avenue, Suite 1300, Toronto, Ontario M5G 1V2, Canada
1 Canal Park, Suite 300, Cambridge, Massachusetts 02141, USA

Business model

Internal discovery and development of proprietary genetic-medicine programs
Biopharmaceutical partnerships and co-development
Platform-enabled target and therapeutic discovery
Potential licensing or partnering of internally discovered programs

Funding

Stage

Series C / late-stage private biotech

Total raised

$236.7M

Latest round

Series C · Jul 2021

Latest amount

$180M

Series C

Jul 2021 · SoftBank Vision Fund 2

$180M

Series B

Jan 2020 · Future Ventures

$40M

Series A

Sep 2017 · Khosla Ventures

$13M

Series A / follow-on financing

Sep 2017 · Khosla Ventures

$13M

Pre-Seed

Nov 2015 · True Ventures

$3.7M

Seed

Nov 2015 · True Ventures

$5M

Corporate Round

Jan 2014

People & investors

Leadership

Brian O’Callaghan

Chief Executive Officer

Brendan Frey

Founder, Chief Innovation Officer, and Board Member

Radu Dobrin

Chief Technology Officer

Greg Hoffman

Chief Scientific Officer

Joel Shor

VP and Head of Machine Learning

Clive Bertram

Chief Business Officer

Tom Masterson

Chief Operating Officer

Harry Patterson

VP Finance

Laurence MacPhie

Vice President

Shawdee Eshghi

VP, Platform Biology

Thong Q. Le

Chair of the Board of Directors

Founders

Andrew Delong

Co-founder (database-reported)

Hannes Bretschneider

Co-founder and Chief Software Architect (database-reported)

Hui Yuan Xiong

Co-founder (database-reported; later reported as former co-founder)

Investors

Alexandria Venture Investments
Amplitude Ventures
Bloomberg Beta
Bob Nelson
Chris Hadfield
CPP Investments
Fidelity Management & Research Company
Fidelity Management & Research Company LLC
Future Ventures
Khosla Ventures
Magnetic Ventures
Michael Hyatt
SoftBank Vision Fund 2
True Ventures

Work & culture

Public materials describe a multidisciplinary, collaborative environment spanning machine learning, software engineering, computational biology, molecular biology, chemistry, and drug development. The company emphasizes a shared understanding of AI, software engineering, and RNA biology, with teams in Toronto and Cambridge. Public employer evidence is limited and third-party ratings are mixed.

Work style

Hybrid

Visa sponsorship

Limited

Compensation

A current Toronto Senior Research Scientist, Machine Learning listing gave a base salary range of C$175,000–C$200,000, plus competitive compensation and meaningful equity; U.S. compensation may differ. Historical U.S. immigration records show one green-card certification and no recent H-1B LCAs, so sponsorship should be treated as role- and location-dependent.

Benefits

Health, vision, and dental coverage for employees and families
Employee and family assistance program
Meaningful stock ownership
Flexible hours
Extended long weekends
Holiday shutdown
Unlimited personal days
Maternity and parental-leave top-up coverage
New-parent paid time off
Learning and development budget
Lunch-and-learn programs

Product & market

Pricing

No public list pricing or self-serve pricing found. The apparent model is enterprise biopharma collaboration, co-development, milestone economics, and potential licensing rather than a conventional software subscription.

Differentiators

  • —Integrated AI, biological data, software, automation, and experimental validation rather than a standalone prediction tool
  • —Focus on RNA biology and genetically precise medicines
  • —BigRNA/BioFM foundation-model approach for decoding RNA biology and designing therapeutics
  • —Lab-in-the-loop model development and fit-for-purpose datasets
  • —Forward integration into proprietary therapeutic programs
  • —Large-scale prediction across genetic variants, RNA mechanisms, and candidate compounds

Technology

BigRNA
REPRESS
Biological Foundation Models
machine learning and deep learning
RNA biology and RNA sequencing
bioinformatics
lab-in-the-loop workflows
high-throughput screening and automation
Python
PyTorch
TensorFlow
MLflow
CUDA
Kubernetes
Docker
Nextflow
Google Cloud Platform
Terraform
React
TypeScript

Customers

BioMarin Pharmaceutical Inc. (publicly disclosed preclinical collaboration; financial terms undisclosed)

Competitors

Recursion Pharmaceuticals
Insitro
Atomwise
Cyclica
Phenomic AI
Valence Discovery
Exscientia
Encoded Therapeutics
HelixNano

Scale & contact

Estimated revenue

$1M–$10M; one third-party estimate is approximately $5M annually, not company-reported

Estimated monthly visits

9.2K

Traffic estimate as of Jun 2026

contact@deepgenomics.com+1 647-598-8879

Latest news

Deep Genomics Appoints Thong Q. Le as Chair of the Board of Directors

Business Wire · Jul 2026

Deep Genomics named Thong Q. Le chair of its board, with Chip Baird moving to chair the audit committee; the company said Le will help guide its next phase of growth and clinical pipeline progress.

Thong Q. Le and Paul Sekhri Join Board of Directors at Deep Genomics

Deep Genomics · Oct 2025

Deep Genomics added Thong Q. Le and Paul Sekhri to the board, emphasizing strategic life-sciences and deal-making experience as the company advances AI-powered genetic medicines.

Biotech Leaders Guide Next Phase of Innovation and Growth for Deep Genomics as Members of Scientific Advisory Board

Deep Genomics · Jun 2025

The company appointed Vic Myer as chair and Richard Scheller to its Scientific Advisory Board to support AI-driven genomic R&D and drug discovery.

Deep Genomics Expands AI Foundation Model Platform for Decoding RNA Biology

Deep Genomics · May 2025

Deep Genomics announced REPRESS, a new model predicting miRNA binding and mRNA degradation from sequence, and released it for non-commercial use via GitHub.

Deep Genomics Expands Executive Leadership and Operations in Latest Strategic Growth Initiative

Deep Genomics · Jun 2024

Deep Genomics announced a Cambridge, MA office/lab opening, Toronto expansion, and executive hires including Radu Dobrin (CTO), Greg Hoffman (CSO), Joel Shor (VP/Head of ML), and Clive Bertram (CBO).

BioFM PlatformCareersCompany websiteContactEngineering/technical blogGitHub organizationJobsLinkedIn companyNews / press releasesTeam
SourcesDeep Genomics homeDeep Genomics BioFM PlatformDeep Genomics teamDeep Genomics careersDeep Genomics press releases2024 leadership and operations announcementSeries C announcementCEO appointment announcement2026 board-chair announcementLinkedIn company profileLever careersRepresentative compensation and benefits listingBioMarin collaborationFunding database cross-checkTraffic, size, and revenue estimate

Jobs and careers at Deep Genomics

3 jobs at Deep Genomics

Senior Research Associate, in vivo Pharmacology

On-site
Cambridge, MA
1w ago
On-site
Full-time
Apply

Senior Research Scientist, Machine Learning (BioFM)

Hybrid
Toronto, Ontario
3mo ago
Hybrid
Full-time
Apply

Senior Scientist, Analytical Chemistry

Hybrid
Cambridge, MA
4mo ago
Hybrid
Full-time
Apply

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